Scaffold Ga0209648_10001295

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10001295
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20028
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F050281	Metagenome	145	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000129513	F050281	GGA	MINQRQFPSRQNEKISEAKDALVRLRANPRDAVAVITVYESCSRELQEVAVRYFGKNQLGKKAVLNLLAAIVSGARTYDPQSMNASEWVSRVADAEARSLREVLDAAGSIGQQIRRAM
Ga0209648_1000129514	F000528	N/A	MGEWKAQISVRVRQALRSELEEFAAREKRKLGNLGEVILEWAFEQLKVAGSTERLLKYKIRLPDTSLTGRKLRK
Ga0209648_1000129515	F091706	AGGA	MTKADEYSELFLWNRNADRLIRVLQRMESIGILSKRDMKVYEVQLEEVRAAFNAQVSEALATRERDDQSRLKRQRTAWENANTSPNRK