Scaffold Ga0209648_10000791

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000791
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24880
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F058824	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000079110	F002853	N/A	MGRGAQSQTRQLTDEQLASLNSLNQQFLGQQQQVGNMLLPQYQSILNNPGLSPADKAAVTGQSQGSLASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRRMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF
Ga0209648_1000079111	F000624	GAGG	MPVHWYAVLTAVISAGVQFVLFLRWLHRRMRNDEITRAFVHDIATNHLPHIYNALQKIAAEQGITLDETPMVRFLDLNGHRRF
Ga0209648_100007917	F058824	N/A	VNASLVRASRVEDPESYDGINGLMSIAENNGQAIRAAFKLRERLYFVKEHSLYAMQDDGTNEPSLWSIAEVSRKVGTPSVRGVGIGEDWVVIAHRTGLYIFSGGEPIKISQEIQPTWNQINWQYGHTLWVTVDTKERRIFVGAPLGTVTSPNKILMLDYRDLDTAEDIAGRPPINITYTGRKTATDKTRKWAPWTIAANACALIERTNGTAIVVVGGGLPGVGGGAATGKVYQLSDTQFSDDGSAIPSYYTTHYFPERAVEQSLNLGAHRKLFSYLTMFVEGAGNLSLTSFTDSVSAPQTQQPLPLSSPALKDLELPINVHGERVAFQVSTNQSGAWFKLQKFTPLVRTDPWAPVRGLN
Ga0209648_100007918	F000781	N/A	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASGGWFDISITDPSAARPGLFYFAESDTTPAFGAPRVYFMGASRNMYVQLGNQTLYWRAYSQYIGSLPSTPVSFGTPPIAVPGGGASGPAPLPSSGSGVFPNGVPRGGNGFGIHPGSRITRQTVL
Ga0209648_100007919	F000703	N/A	MQIREYQESDLAALRAIHAAQGFDYALPDLRNPLFVTKLVLLDENVAPPFRAASVPLNAEAASRDAGLEPGATEERVLGAAFLRLTAEAYLLLDPRAGTPPERWQWLLALHAAAERDAWHRGLEDVHAWLPPPIAKKFGKRIARLGWLRDDAWAPYCKRLEAGK