Scaffold Ga0209648_10000586

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000586
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28050
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (67.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006480	Metagenome / Metatranscriptome	372	Y
F016552	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000058611	F004677	AGGAGG	VPNCKTEPPWEFLLSASRNSLQSYELSRLSHAANLRKEIGGLLDQCMEENSAAMLARWLMEQRERPQQVQKDTSPGEGIPKIASTVSDNVFADRAVAPPAIRGPG
Ga0209648_1000058614	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQAALDGPDWASRMVLFRLYYLGLAPYENARHFLGLSEPSWVNWTEQIRHRGGKELLSRGMFPPRKYFTNGT
Ga0209648_1000058623	F000885	AGGAG	MANTKLNFIGEVTQIAGVAAVVAGVVLSLHHWPAAVALIGGGAAFYVGKKLRAQ
Ga0209648_1000058631	F006480	N/A	MRRILIGAIGLLLSGVVTARSKTDPLVFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCASSLREHDAIVESQIARVTDLVLDCGDHKFVVKSLDFNPRRK
Ga0209648_1000058634	F000739	GAG	MTISRVEIWLKGLFAAAISGAAGGVLTGFAAVGIDPQHFNLQSGIGATMRIGAAAALINAVIGVAAYLQKSPLPSGD
Ga0209648_1000058635	F000696	GGAG	MPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDTSLQVAITDATAPPNQLPTDLLVPLKIWERRNSSTDEFVEMVDLTRHGGLPSRAQGLTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDMVSAAVRREQQSARRRRPFSARSGYTPF
Ga0209648_1000058637	F016552	GAGG	MIRSKIAMGFVCGLLALVLHIVPAAIEPVHAQGTRKDDIVFNSRGIPLAGATVRVCAMPASGQPCTPLALIYSDSALTQALANPTTTDGLGNYFFYAAPGKYEIEISGPAITTKQIPNVILPNDPASPTFSGAVSAFSLTLSGNLTVSGNTTVVGNLASGTLNLANQSTPPGSASSGTVNLYAKTADKRLYYKDDTGAEVGPLGAGAQTNAVNTFTANQNLDSGLHIKGPDP
Ga0209648_100005868	F000536	N/A	MLELSPLQMQVVERLLEAGFRPIAIPPYESALCMRKGDCAAVLAPAPNGGMKLLAPPSYLVDGNLSVRLKRGSGEVFVWKKKEVEATLEKLRELEAFRREVTEILALPPKQ