Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10000535 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10000535 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29023
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29023

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F006125	Metagenome / Metatranscriptome	381	Y
F006229	Metagenome / Metatranscriptome	378	Y
F028629	Metagenome / Metatranscriptome	191	Y
F099605	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000053515	F000624	AGGA	MSVHSLSSASATVWLTTLVPVVVQCVVFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAQQGIDLDETPLVQFVDLSHRNRS
Ga0209648_1000053517	F099605	GAGG	MPNTTQSASWDFNPTDPVRLAATFSFDTQDTQDSAPVAAALAAIQARLAAATLTATQPDGATISITVTI
Ga0209648_100005352	F028629	GGAGG	VKNLGSVMVAYMIGWGVFFIYLVSVARRTADLRKDVERLKKSLTREK
Ga0209648_1000053520	F000703	N/A	MLVREYRESDLAQLRAIHAAQGFEYALPDLSNPLFVTKLVLTQGDGSSGEAAQHSAEQSADVKVDASADGAIVGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAATERNAWQRGLEDAHAWLPPPIAKKFGKRLARLGWLRDDAWTPYCRKLSMPCSQS
Ga0209648_1000053525	F006229	GAGG	VNATAKQTDVVALVNISTEKWPPRHRTYFGSLAISSPQPGEAFAITPIRGCLGVMDLGDKRTMEYRITAREIAEDIAREINGDSGEGSYHGVFVAAGEAPTESELAEARGRLEEFQRRLVAAADLEWERTKNPMFITDLERRAARQLGLEKPWLYDARPLADCPVCAEKIKHGVAVCRSCGAILDREKAAQYGLVAREEKFATETQRHREKREKEPAKQ
Ga0209648_1000053529	F006125	AGGAG	MPITISLSPLNVDSSANNFVYAIATLAFSGSYPTGGDTVDFTTVADKLPSTQIIQAFAESQNGNSGYYVAIAGTALNNWKLKAFNGGGTEITAGTYPASVTSDVVQLAITARKLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10000535

Overview

Ecosystem & Geography

Associated Families

Sequences