Scaffold Ga0209648_10000494

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000494
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30329
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F007493	Metagenome / Metatranscriptome	350	Y
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000049411	F007493	AGGTGG	VIGTSSALFGAVVLLVLILGWIRAESRSRHLPYGVDGWLPDQSDAVELCPPEFVSQIFSEQDLSFISRLESPDLKRDFLRERSAVALLWVQQTAAGVRRIMGRHLEASRLSADIEFATEARIFLQYAQLRLICAVLFLLIGLAGPQRLHGIPLRADKLTRRIGNVLREFESGARAREMNGARSS
Ga0209648_1000049425	F005666	GGAG	MKTLRIRILLPIAVFLCASGANPARAQAPLEPAQMPARTSFYLIWRGVPPPDVRKANSLLAFWDDPDFAPVRSAMASNLMGSPAEKSAKEKLTAEEIQEYAGPLENSFTVGYLSEPVKRAVSNAGAAADSKPSWNGMFFVYDRTGKELLLSKAILRMRAGGKEVPLLSQVTIGGVQVVKAQGKNGVSYWAEHGKYAVIASERSVMEEILGRLDGKVSAAASLAQSAAYQEAQANLGSGLLEFFLRIPDLKNLAADSKAGSVQVGPLLDAARLDAVHSLSGHITFEGAKTHVQAAILGDVAPGTPFDIWSGGRPAPASLALVPADAISYTSAQLNLLGIYDTVKRVALAAFPQAQKGNADLMDMIAQQKLGMPVPEALGLLTGEFASMQTSPSMDSAKQVYFFGIRKKPETLKLMRAIFSEQLTSERNEGDVTFLKISLGGKQAGAGVAQWNFFNLAVTPDMILGGSRIETLREVLSNRAHASSAAGLATVPQFQASRAQFPENLNGLSYLDFQRVDWPALRDRWIEEAKKSSVAKNVDSSKNAVPSAAADWLAQINPQVFSRHLHYSSSVSWKDAKGIHWDQWVE
Ga0209648_100004945	F026411	AGG	MNGREQEANAALAEASSGTECRAEFIFYARKQASESRSVQVLGDYACDFRRPDWAHRWSDWNSGRNRYLNLFLCAKHARELGLM
Ga0209648_100004946	F027294	AGGGGG	MRVFRAFAIRLTVALISPGVFILYDSMARRSAPAFDSVRAGVVLFSLALPFLHFLSRPAV
Ga0209648_100004947	F080432	AGGAGG	VAIRKGERWLCQNPRCRSEILVTISSRVPGGSKPRCSCGEFMKKAYVRPELSTFESANQADRTFEPSQS
Ga0209648_100004949	F041398	AGGAG	MTKLRIQVALYMFVLSAAVAIFSGVVPGPLLNAGKHNLPAIQSNGAVTLMADGGDPQPPPIPLS