Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10000458 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10000458 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31086
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (79.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31086

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (79.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002013	Metagenome / Metatranscriptome	604	Y
F022062	Metagenome / Metatranscriptome	216	Y
F025246	Metagenome / Metatranscriptome	202	Y
F043881	Metagenome / Metatranscriptome	155	N
F084587	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000045810	F002013	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMINLQFMLEMRKLEELDESYFNEEFNVWLSDEPLTNEEICRLMRGVERERKLEGKPPLVQFLPRGKHTKKAPKKTEGVHFPRKVNGSPTPASGVKSTAPEDAHA
Ga0209648_1000045813	F043881	GAGG	MHRNISRAYYALMAEHHRVRAAHMKILARGDATLERKLLGAKEDDEGHIEEVVTYEERLSAAQRRRVYKLSSYGRKVEKLVEALLKLQETSDALERGRHK
Ga0209648_1000045814	F084587	GGAGG	MEQERDVLTVKDARKFEVHCNAGDAGELCVGTESLSVKVGQRIHRDGVEEIWHSLLIHCDAAEDGSLRVKVIVCHFDWEESRQIALIQSKPNHQEGTRTLIFDLEHKDV
Ga0209648_1000045816	F025246	GAGG	MDLRCPKCNSTDLKKVSLAYEEGLFRSKGRTRLRAVVVCGGGPDILVGRATTHGSQQSALSKKLTPPVKWSYLKVTGWSVLVFLGAGWLVFYVNTVTTNATTVSSAPLTGFGLIAGALFVLLIFLAFRHNHAIYQRRFTEWDRSFVCQRCGAVSRQEVGA
Ga0209648_1000045832	F022062	AGGA	MHIHHRPIQQTSHDLPHPTKVVPFGNYGAGLWTGHPIGLVIVIGLLFMGFVGLPEARWFLALAAPAGAICGFFMWLRHRKGLAGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10000458

Overview

Ecosystem & Geography

Associated Families

Sequences