Scaffold Ga0209648_10000297

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000297
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36960
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001185	Metagenome / Metatranscriptome	754	Y
F002025	Metagenome / Metatranscriptome	603	Y
F063394	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000029723	F002025	AGGGGG	MNNQVPKYVTQARASFLLGIPEAEFRRISKESGLGRVERAGNEEETYFTYEELRRICMLAAHQMQSVH
Ga0209648_1000029724	F063394	AGGA	MMFRDAGKGQLEWRNTIAPLLGDWVVLLAMEHQRAPLPVSSALWKGLLRKGFPNDLDELAIFARRYLFLGDARLLLAKLRIRTATTPPVRETLSKEDKIAAGDRPQIKDAHTCK
Ga0209648_1000029726	F001185	AGG	MPLRLGRLEKRTRLAVPVEIFSPQNPAAPERTTTENVSSLGIRVLTQRARDLNERLMISSLVGDLRTIARVVYCQRLSDGRFGVGLQFQGQAVNWSKGSLAGAAG