Scaffold Ga0209648_10000118

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000118
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52106
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (72.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017051	Metagenome / Metatranscriptome	243	N
F025365	Metagenome / Metatranscriptome	202	Y
F033968	Metagenome	176	Y
F085194	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000011810	F085194	N/A	MRGVERERKLEGKPPLVQFLPRSKRLKKTTKKTEGVHSSHKLTGSPTPASRVGSIVPEDAHA
Ga0209648_1000011811	F017051	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSRINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNAKSVN
Ga0209648_100001185	F033968	AGGGGG	MKQKWGREDDAGDFPSDRAVWSMGAFCVALLSVFAIAGHRYMRVWTPLQRHYLLTYAATPVAGAFRTDAPCTLLMVATRKGPRLALDNELEPFVTEKGESTFTLTEAAMKTGDLKLE
Ga0209648_100001189	F025365	GAGG	MPRKRKPKAVCDGDPPLTPITAKERREIDKSIKRKYDRFRRRYPEVHGKVVDFITHSIEDGTRYFSVRFKDKTDFSLRYACDMFVVGADLCDFKTGDFEMIREYMKPIPT