Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10000041 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10000041 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	74484
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (74.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

74484

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (74.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000629	Metagenome / Metatranscriptome	972	Y
F001278	Metagenome / Metatranscriptome	733	Y
F002025	Metagenome / Metatranscriptome	603	Y
F026701	Metagenome / Metatranscriptome	197	Y
F033387	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000004131	F001278	N/A	MTKLLITEITRRGPAFCVIGLQREKEKIQSIRPVPASANSWLHFPHQRGDILECALAPFPAAKPHIEDRTATRGFQKSSSVHEAETVTYLRKAEMANSLPDLFGCAIHENKKGAGLHAVPQDAKRSICGCETQNLRLELYANELRATLALPSGEVLRDLPVVDRDWRDFIDAALAPGRGANRTARLERFLNSQFHYKIMSCPHHFIRLGLTRPFHDLCWLMLDTLFPLPKPEWLEEF
Ga0209648_1000004149	F033387	GGAGG	MLRKMSFLAVLVCVLISSRPGYAQDQPSLGDVARQARKDKEKNAAQPKKVITDDNLPSSKALGGLSDLGSSRSAGDGSAMSRALEGLDRAESALNKMDPMDRTTLAKAALLDNDVDFAGRSRWEDKLYSAKQQYVSHGRELFREMRQILADVQTLRSQGGQTKVGPDDPQAKELLRRLQEIVQDAIRTENAYQSVVVEGWDLAKLAKH
Ga0209648_1000004158	F026701	GGAGG	VKLFSLLKIPTMVVGFGALLFLAPACKAQSEVSPDHFDGTDPWEIAARRPVAAKAKSTLATGSYLAQNKKTGLGASLQLASAHEVSKPTPRDAVAVQDKRKVAVRKPDKK
Ga0209648_1000004160	F000629	GGA	MPTLYFCQPHAKNQGMLRAVLSVNECERVVSQHAATYVGDKFPKVANEQGLANDFAVLNFPPNETPKGWRSGYYRLDSDLTKLNESLLALSR
Ga0209648_1000004176	F002025	AGGCGG	MGSAMNNQVPKYYTQARASLLLGMPEAELDRISKESGLGHEERAGDEKETYFTSEELQRICEIAGRPTETVH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10000041

Overview

Ecosystem & Geography

Associated Families

Sequences