Scaffold Ga0209648_10000014

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000014
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97173
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (78.79%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F002853	Metagenome / Metatranscriptome	526	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006480	Metagenome / Metatranscriptome	372	Y
F006913	Metagenome / Metatranscriptome	362	Y
F035232	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000001419	F004677	GGAGG	VNHYRTEPPWEFLLSASRNSLQSYELSRLSHAANLRKEIGALLDLWMEENSAAMLARWLMEQRERPQQPLEDAPPAEPPSKNRHSVSDNFFADRPVAASANRGAA
Ga0209648_1000001422	F000188	GGAG	MGVKPELAFDVCWEIYRGAREVLETKRGISALNWKDTAKFLWRPDFRPRLNEWVADFALAGKSALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSEHTWVNWTEQIRHRCGKELLGRRMFPPRKYFTSTE
Ga0209648_1000001423	F006913	GGAGG	MDPETKRAWRRLLKEVREDTPIVVRGLASAGKQMPRKLYSAVVRGFRSLTGRAKQWELPFGDRKTLVTQLSRVRLRSPIYKV
Ga0209648_1000001432	F000885	GGAG	MANAKAMFIGEVTQIAGVASVVAGVVLSLHHWPAAAALIGGGVAFYAGKKLRAQ
Ga0209648_1000001434	F035232	N/A	VRDERRREDIRKVEGDDPADAARYGLVSGGRLAGVGPVFVPARAGQAPPIHSQGSTPHFMTGMPLGEQIARQVTAEDPTSRAIHYQRLEAEAKKFFRPKPLPRRPR
Ga0209648_1000001435	F001619	GGA	MKDFFQRLFSSRYIGMLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQIQAWREGGASRDAVTNFDEKSSERSNGPVSHN
Ga0209648_1000001441	F006480	N/A	MRRILIGGIALLLSGGISARSKTDPLVFIFLRVDHEQDVAILRPMIAPDIGVQLDSGPRELKPGTVLRCASSLRDHDAIVETKIAKVTDLVLDCGEHKFVVKSLDFSPRGK
Ga0209648_1000001442	F000512	N/A	MILVVRETHDTPETVAHRLARAGGANRFGEVNYRVVWGWNRLAWIGGKFEERDPATGSLLREVVELRQEPKYLAVNRWHIERWLPPEVYGSPRAWYAHTIERENGISVPALGPYPSRGEYEHCFTLESPCGEFVQLTPTIAEHIALAIEWSRRAPRARSRARLYEREACSGRNYENWAFDVLDDSVPAFHKQPFVSVA
Ga0209648_1000001443	F000739	GGA	MTRFHIWLKGIFAAAISGAAGGVLTGFAAVGIDPQHFNLQSGSAATMRIGAAAGLINAVIGVAAYLQKSPLPAE
Ga0209648_1000001454	F000703	N/A	MQIHEYQESDLAALQSIHAAQGFDYALPDLRNPLFVTKLVLAQDPTPSDECRDTIYRAPTDATRNDSEANGLATASREKILGAAFLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAQKFGKRLARLGWLRDDAWTPYCKKLSPAK
Ga0209648_1000001455	F002853	GGAGG	MGRGAQGQTRQLTDQERANIDALNQQFFGQQQQIGNTLLPQYQSILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQKNQLAFTNTAFQRQMAALQGLSGLFGIDSNLLGRTLGIPAELLNVRANASRGSGGGFFSALGSGLGSALGALPGAFF
Ga0209648_1000001456	F000624	N/A	MTPAHWYAVITAVVSAGVQFVLFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAQQGIELDDTPLVRFVDLNGRHRS