Scaffold Ga0209648_10000012

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000012
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100714
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (80.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F008569	Metagenome / Metatranscriptome	331	Y
F009565	Metagenome / Metatranscriptome	316	Y
F051726	Metagenome	143	Y
F090128	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_10000012101	F000232	N/A	MKHPKQTQRAPPTHPSALAVPSYHRILVKHGLIEKTLSIPDAYEVFLKVGADPEVQKLHRQIAHGSKMKHVPALYLATAMALQGMTKHELEALKLRMEEKRV
Ga0209648_10000012102	F008569	GAG	VAYRFVTACANCAKQFGVLWVMDSTRRAGPKTVAKITCPLCGKRFDQDAKGLLQIGSQLQNLVFGRPVRSVEVDYDCPYCSDRGILVSLLHTDLSWDELSKEHVQTAVCDNGLCSQRGVFQELKPSRVVLGSLNPVELRTGNYVRNCRTSP
Ga0209648_10000012103	F051726	GGAG	MSIKERQVYRCQNRDCACEIVVTKTTVETKANLRCFCGAEMKKPYSPPVFRMLDPDDELVGRLEADRNLTS
Ga0209648_10000012108	F009565	N/A	SIAKAERLVYLKLMEKYQNTDPFKYILYSAKIGEQTPAMATGK
Ga0209648_1000001231	F090128	GAGG	VRFMTSDGELYDIDWRDIEGAFERDPEGRTMPGDNPNELLLTAEDSVWLRMRGIEF