Scaffold Ga0209648_10000004

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10000004
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113607
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (74.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F002063	Metagenome / Metatranscriptome	597	Y
F003414	Metagenome / Metatranscriptome	488	Y
F003732	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000000436	F003414	AGG	MTPRCPARSVIALLCCATGMLSGCSARKRPNITWATAVQARPVTQSHTLGGDVAEDPLPELRFELPPFPSRLIFMRTGPPRPRGSTPVPAATGNDAEKSEAPTIAPQLTSQESTVAEQQTNQSLRIAENNLQSASGKNLNATQTDLVSKIRGFIKDAREAAKITDWSRARSLAKKAQVLSEELASSL
Ga0209648_1000000448	F003732	GGGGG	MSTKEKVLFLWLLVVVVASFVFRHFWGSTVCALGRAVALNLVCLPGLAKFAAVIFGVHFL
Ga0209648_100000045	F000678	GGA	MDKFEEFGKRIDEEFARLKSIKNFEDFGKRVDEELDRVKSFVKEEVAPETEKRTAQFLREVSEKLAEAASKIEAHNAARTSRNPPTS
Ga0209648_1000000455	F002063	AGGAGG	MIAMLQFATLVITTIFAVAAAAGLNWLCLEAAFRIMRPATARRIPARTELVRGTAQLARAYSAPR