Scaffold Ga0256404_1049360

Overview

Basic Information

• Taxon OID: 3300026549
• Scaffold ID: Ga0256404_1049360
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3118
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015685	Metagenome / Metatranscriptome	252	Y
F023770	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256404_10493604	F015685	GAGG	MYEDSQRDMAKITLHGMFARVKGKFNKSETLYFKGCPCGKEQLGVDLLNPSKAKEPKNVQCQSALKTAAQAAKTALADPTERASLEAAFKAQSKYTSLFAYAVAQKYVKPNFD
Ga0256404_10493605	F023770	N/A	LSVAKVEFDIGIDSVRGILMGTDPFYIRRYPEPGGGVMHIVQARPNRSGHVPSPAEAANRVSFGAQYGTQRHLDFLERKWKDQLEIPFDELTSNEMRPS