Scaffold Ga0256404_1028009

Overview

Basic Information

• Taxon OID: 3300026549
• Scaffold ID: Ga0256404_1028009
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5296
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F084920	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256404_10280094	F041054	GGAGG	MSVRNCAELGVNLQYIIKRLFANQNLLKLLYYTDKDPLSQPDLTKKQIQDEIFEKLIKIVPRVGPHETAHSVVAVRVARGQGLASNNEFKNVVVGIECFIPLTQWIIKDTNLRPFAIMGEIQKSLNGKKIEGLGKMTGGDFALNFLTEEIGAYEQTFNITSYD
Ga0256404_10280097	F084920	GGAG	MDNEFGMQELYFVQLKSTYPIEIKGKQIAAGEVVAAFDKIQIANFKDIHREVSSQGGYQNRKLLIWNRTEGVDLVFTQGIFSKTQFGLMNNSRLLSTDEDQLIHISQRDELETNKSGIITLTHKPIGNWIFVYNKETGEKLTGLKMISPTEIQTPLVYKDVIVDYEYGYDNGANVSVIGEELFDGFLSLEGRSRIKDDVTGEVHTVIIKIPKLKITSSFNLVLGTNAQPVVGKFSGTAMSVGERKDCKALEIYFLEDDIDKDSEWR