Scaffold Ga0256404_1000265

Overview

Basic Information

• Taxon OID: 3300026549
• Scaffold ID: Ga0256404_1000265
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135134
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (50.94%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058536	Metagenome	135	Y
F077963	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256404_100026579	F077963	GGAG	MMKLFKRILDFFNIHPDKNQRWTLSTVFVVGLLYTYVQPAITKAWVSELPAEWIAFQSLAYSICGLLIGMIWKGWVRRKAIQWFTILCIIESAAGFFVGMWLSFVEYNVWVLAIACLLYGTLISEFVGKCLMTFRPKLWNEHEREVYDNNNDVVCGIYCIVGYACSLLFMPSLQVAMFVWGLTCALDNIGWLVVYHKNRDKFREIENETTKEK
Ga0256404_10002658	F058536	N/A	VKSVVKQLALSELRRVAEKTRLVKVKVPDGKGGFTLKEVLERVPWRVWYVASQNGDVIRGLECVTLAVDVDGPGAYPSRLVQFIASGQTRRLRDCCILQADDFKLVI