NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209161_10000557

Scaffold Ga0209161_10000557


Overview

Basic Information
Taxon OID3300026548 Open in IMG/M
Scaffold IDGa0209161_10000557 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30247
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (65.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016793Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209161_1000055734F016793GAGMTSKARKNKPTRIEKVLPLDKVIGFFRQRFHDPYLNPEAELSFVDFQTGFPEVPREDLEEGLSHWVMRPGARVLSTKTTAIDGLELQVWYIHGLHEEHADLEDSMSRSPIQA

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