Scaffold Ga0209161

Basic Information
Taxon OID	3300026548 Open in IMG/M
Scaffold ID	Ga0209161_10000165 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026548 Open in IMG/M

Scaffold ID

Ga0209161_10000165 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50068
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (79.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50068

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (79.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F009061	Metagenome	323	Y
F022171	Metagenome	215	N
F044399	Metagenome	154	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209161_1000016512	F044399	GGA	LLAIFPWAPAYLFERADFWFGQTNNGYWYYQFSTTRLEADVVSFALGGILVAYLLRPRWAVVQVFLSASLIYVLFYLACPTYLAGTIWRSECYSFGPDGLAGVRLCTMMFSFGVLPAFVRASYKGDKLNKQLRPWIAIFGAFITSVVTAWFPLTAWFSGVTYLAPLVPFQAALLFGVSEIAVGIQAAKISRSIFAAAASGATSELLLSGFLWPLLCPSCDRSLLFLIIPSWGFFALIGGVLELGLPPKLSVGPLRHFNPRLEDIRRVGIAVVLLFSLWTLISFQFWDPSVLYATSISSGPGRLTIGVPTYPYVAGYYNSTQYRICCVQIGVNFTKVDLKALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFVLPNGTRVVSGSTWETCDGNANCGGIFWEHLRYHTQRIINPTDISTSVYLRMMWQYDQPNWHADWYYNYTGQPWTKFGSFVPDFREGHYFDIGVVGVGIYPSAYAFFYQFGVASKTTVPGWSVQLLYPSFVHPDGSWRLMERANIIQGWHSYWKANYRWGGEPYNGVSARAKANDKTLPAGILQLTYSGVGTLPEKTILW
Ga0209161_100001652	F001816	AGAAG	VLKMIEVFADKCPKSTLLNGPFGGDDKAFDRLLGPSGILTRTSLIIASTDGRVTHYSRTDAGKVYQQVLDMQLNFLDPYTGGEVWKK
Ga0209161_100001653	F022171	AGGAGG	MADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFAQPGGLSFPMRPSVDASAVVETALTVVLFLLSVISIYSLLGLRRRYSRLLAMAEKLGR
Ga0209161_1000016534	F009061	N/A	MTSVEGTEYPDQFADFLDFLCEKYHMDRSRLFIEYSSRPPPPLKGTGGGYYEGLLSYREKNGHSEFLITVFKVSREPLLTLAHEFAHLVKNLKSGNFDKPLGPPDDTAERTLDNQAINDLAEFRELDRLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209161_10000165

Overview

Ecosystem & Geography

Associated Families

Sequences