Scaffold Ga0209161

Basic Information
Taxon OID	3300026548 Open in IMG/M
Scaffold ID	Ga0209161_10000003 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026548 Open in IMG/M

Scaffold ID

Ga0209161_10000003 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	183344
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	120 (68.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

183344

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

120 (68.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001375	Metagenome / Metatranscriptome	711	Y
F008298	Metagenome / Metatranscriptome	335	Y
F010456	Metagenome / Metatranscriptome	303	Y
F011070	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209161_1000000320	F010456	GGAGG	MRKLTSTLVAAVALVALPHVALAQRTRVAAASGPKNEIGVDLGAAYSHTGSGCTANCGSFGVGTPVDIRWGFLANGPLSFEPRFTFNWLTGGGGHVLSFDPDLNVIYRMSHATARRGMYLTGGLGLAIASASAGTVSNSATQLSLNGGVGKRIPVESNAWRLEGFLRYNFKNSGKGIPSSFNIGARVGMSFWR
Ga0209161_1000000323	F008298	GGAGG	MKRMATIAALIAFGATPAVAQWAGMPVWNNPKGGTGVTIDGDLGFPTTNGGKGTAYGARATVGLANISLTAGLSNWKPEGYSSSTTSMGGTAQFKVIGGSLIPVAMNFQLGAGTSSAVTSGLITQPKTTMIVAGAGISVNVPTPGLSIEPYLSLGERWNKASGFSTQSNFGWIIGANLGFGMMGLHLAYDSQKLGGATRGIIGVGAHVALKAPIGM
Ga0209161_1000000357	F011070	GGTGG	VSDEPIKDPLALGLGSLAAGAGFGGACLTAAQIVAAILRGDLEPNVYRDTAPDPLLAGVIAAIGVGGAYGWYRGVALDNIWQRGVIAVLAAIGAVLIGFLAAPLDRFLGLIGLLVWFLLNILLGILATRWAIKGKGAEGT
Ga0209161_1000000374	F001375	N/A	MRKVWLLVAFLMACGGGLEPEPICAPSLVGLCGTVRFRGTVPANTENVFIAAYLTFPQTCTDLIANRQPLIPGSVPYTDSLALYSVPLSPGTYHWVLAVWKKPGTLTLTPADTQYLRVGGYYRNPADSTQPGSVTVPDGASAGDVDFVVDFDRLRPATDFVTCTGP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209161_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences