NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209156_10002998

Scaffold Ga0209156_10002998


Overview

Basic Information
Taxon OID3300026547 Open in IMG/M
Scaffold IDGa0209156_10002998 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12907
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F007216Metagenome / Metatranscriptome355Y

Sequences

Protein IDFamilyRBSSequence
Ga0209156_1000299816F000611AGTAGMQTNMNFPTYVFATVNSGRATKVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGVSVLTCEHNTSENVIKQLSNIPGFIEATTVPGQFDIVALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA
Ga0209156_100029986F007216N/AMFRNLGYSWAAYGENVSAGLVFAVVGLTAASLYFCPDSNTLREAWSRLKSRSSFLFYEGVVFAGIGLNLFLPNSFLPFTIVLLLAGTVYPTTLFLSARSRAKPPHIRKAMATLATTWALFVTVGTILFILGTQPPLLPIFLPYGWEMALITGSVLFFLMSLTRLYPLGFGGFSSGQLVPDTIVKAGHRYLILHDSGKRAVSFLSSTLKGLIDSGARVIISASSNGWLVENLSQHESHFSEWKQNGRVIVSEGWGGHNIPREGLTDRLSFGPTSTVFVNELSQENLEGIVSPPDSGPGGTRQEPAELFLLESSKAPRPQLTEFLRRNTSIELLNLSESTDPFSSMVELDHQKIRGSIILLEYETSSDYEGIVDRFLAEGVSNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGEMQIPDKELGLVAAVLSDFLDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLTVPNATALFLANINTMEPRFLGALHGAFALQLRLDNEGLKAVKVPAN
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