Scaffold Ga0209156

Basic Information
Taxon OID	3300026547 Open in IMG/M
Scaffold ID	Ga0209156_10000887 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026547 Open in IMG/M

Scaffold ID

Ga0209156_10000887 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25200
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (65.38%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

25200

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (65.38%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y
F006583	Metagenome / Metatranscriptome	369	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209156_100008871	F006583	N/A	MVDCAACGRIVHRDEPVFAAFSQEGKRTYFHQDCEQKADYISRWKEEAPWAFKSIKLTIPDWQQCSSKKHLGVWQSIFIARRDEDIWCPDCGLKIARHEGLTCPKCSSPAIVVGVESTKMVFTHREPLYKLLVHCTQKGDDSISYAISRGFTPVTITARIK
Ga0209156_1000088722	F002498	N/A	VKAQERFYSLSKGVESLSKEEHGLFFDAVQRLGLPNEVKQAAVALYLDFKSRPIGEYNANHKNLEIFLIATVSLAAKAMGDLRTDHEFESKMFVSKEKLADAEERILRSFGVQDSIMPFPDLVSQLTRRQIESMAQSFAERDLVSNNEREELVRRSNEYLDAAVEKGLTPKMSYRGRAAGVTLKAIRDIGLQISETDIARAAGFDKKSMAINTNIIDALLKDPKVRREESPNAGHSVKK
Ga0209156_1000088724	F004048	GAGG	MLPEYLKGELSQDEWKILIAMHMVRFKVYNKGRMSRLLGKIALAPRRLFFLLLFYIPAAASGGLSGPVLVFPSPIFLLAALGIRRSLRKSLKRREFELDRNVAKQLGTQQVSQALEKLQNLDWRGIPANLRFAFLAYWNPSIKERIGELSNPRLEDLPRPSRIPKIGLRGRVITVLVGFAIFWGSGLIAGNLYARDQTTVVCLDITCSALVVVAVVGFWMAIIGGISIVIWILRRFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209156_10000887

Overview

Ecosystem & Geography

Associated Families

Sequences