Scaffold Ga0209805_1001232

Overview

Basic Information

• Taxon OID: 3300026542
• Scaffold ID: Ga0209805_1001232
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15729
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000916	Metagenome / Metatranscriptome	835	Y
F005907	Metagenome / Metatranscriptome	386	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209805_100123214	F005907	GGAG	MKRAGAFLGPVGLFFVSLGYTVSAGIARLFVTLESICTQHCPVLRVEGFRFHHMYYGVLLLLVSTGVMIYASDARARWDSALVAGIGLGLVADEIGLLILKLSYWNPISVGILAGGGLLLYLATAVKSWRAGVSDFHFVDRYQFLALIGLLLGLTGFLYFDRPVRLVVEATALGAWLASAVLVAKYGRRHFFLLRNAPLNYPSPNR
Ga0209805_10012325	F000916	GGA	MLRKTLAHYLLLQVGTFVTAAGFDAIAPAMNILTDMKANLKVQDIKSKSQGSRVEALSQNLADSMGETFNSDYEIEAEDGSRTVRLNRCGCIESVVAQAEQYGITKLQARSIFCGTCVGSYKKAAETLELDFKGRLRGDHGCSMTFSAK