Scaffold Ga0209805_1000420

Overview

Basic Information

• Taxon OID: 3300026542
• Scaffold ID: Ga0209805_1000420
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25850
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002901	Metagenome	522	Y
F028748	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209805_100042011	F028748	N/A	MPFGFSPVREALEAYVAGRVKAERLVVAVAAEYYRDALNPKGLPNGRGKREMLRPLIDVIDRASPGIVELGRADGGPGFELRLVERPFPKEHEAELRRAAEAVLGRGETGGEARKGAGEGGTAERGLVARLMAGLRRLFSPSA
Ga0209805_10004205	F002901	AGGAG	MRVMPAVMLFLLVAATAVESQVRNAELGYSLTLPEGFTDFPAARSQKDIVDSWSEATPVSAGGPLMLLVARMHGTLSREAMRREDVPANTQVVSSKWKGFDVSGLKTLTTQAGQSVFVLVAQVPLRKEAVQLSVAGPADQEGRGHAIMEATLASLEGETNWLTSSERAGRLGRAAGVWIGIAVAAIAILAWRKRRARAG