NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209376_1073616

Scaffold Ga0209376_1073616


Overview

Basic Information
Taxon OID3300026540 Open in IMG/M
Scaffold IDGa0209376_1073616 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1845
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013177Metagenome273N
F045649Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209376_10736162F013177N/AMTINGTYPVSVESGGIFAVIFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLASPGLGVLLAFAGAILTFAGVRWSIPSEIVRGHEIVGGVLYSVGFLIILTVVVTSFVYGGLFSTGSDQLIVAAPLLLIGIFMTGLGLKLFLTPERRQGLSAF
Ga0209376_10736163F045649N/ARLALGVLCGVVLVLLPAVFSAGPTANPSTSSIQNLGRAYQPATLAPAAPSFFGLDNATLGGLSLLTIILFIFLPSTIFSILVRRWAEKKAHDYLE

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