Scaffold Ga0209376_1004604

Overview

Basic Information

• Taxon OID: 3300026540
• Scaffold ID: Ga0209376_1004604
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11924
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047502	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209376_100460412	F047502	GGCGG	VQVRPAGVEAETARLTVPVKPLTAVTVIVEVPEAPARIWAGLTAPAAMVKSTTWKRIVAV
Ga0209376_100460413	F047502	GGAG	VTLAGNVHVRPAGVEADTARLTVPVRPFTALTVIVEVPEEPASIWAGETAPAAIVKSTTWKRIVPVV
Ga0209376_100460416	F047502	GGAG	VTLAGNVHVRPAGVEADTARLTVPVNPLTAVTVIVEVPDEPARICVGDTAPAAIVKSTTWKSIAAVVRVRAPSVPVTVTV
Ga0209376_100460417	F047502	GGCGG	VHVKPAGVEAETARFTVPVKPLTAVTVTVEVPEDPTRICVGETAPAAIVKSTTWKRIVPV
Ga0209376_100460418	F047502	N/A	VQDSVAVCGDVPKVTLAGRVHVRPAGVEAETARLTVPVNPLTAVTVMVDVPDAPANIWAGRTAPAAIVKSTTWKRIVAVV
Ga0209376_100460419	F047502	N/A	VHERVAVCGEVPKVTLAGNVHVKPAGVEADTVRVTVPVKPLTAVIVTVEVPEPPARICVGDTAPAAIVKSTTWKSIAAVVRVRAPSVPVTVTV
Ga0209376_100460420	F047502	GGCGG	VQVRPAGVEADTDRVTVPVKPLTAVTVIVEVPDEPARIWAGDTAPAAIVKSTTWKRIVPV
Ga0209376_100460421	F047502	GAGG	VTLAGKVQVKPAGVEAETARFTVPVRPLTAVTVTVEVPELVAKIWAGDTAPAAIVKSTTWKRIAAVV
Ga0209376_100460423	F047502	GGCGG	VQVRPAGVEADTARFTVPVNPLTAVTVIVEVPDEPARITVGETAPAAIVKSTTWKRIVAV
Ga0209376_100460424	F047502	AGGCGG	VRVTVPVRPLTAVTVIVEVPEAPARIWAGVTAPAAIVKSTTWKRIAAVV
Ga0209376_100460425	F047502	N/A	VALHDSVAVCGDVPKVTLAGKVHVKPAGVEAETARFTVPVKPFNAVTVMVDVPEDPAKIWVGDTAAAAMLKSTTWKSIAAVA
Ga0209376_10046046	F047502	GGCGG	VQVRPAGVEADTARLTVPVRPLTAVTVMVEAPDPPASICVGDTAPAAIAKSTTWNRIAKVVWVMLPLVPVTVTV
Ga0209376_10046048	F047502	N/A	VHESVAVCGEVPKVTLAGNVHVRPAGVDADTARFTVPVKPLTAVTVTVEVPEDPTRICVGETAPAAIVKSTTWKRIVPVV
Ga0209376_10046049	F047502	GAGG	VTLAGRVQVSPAGVDADTARLTVPVSPLRAVTVMVDVPDAPANIWAGRTAPAAIVKSTTWKSIADVVWLRAPLVPVTVTV