NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0256872_10293069

Scaffold Ga0256872_10293069


Overview

Basic Information
Taxon OID3300026539 Open in IMG/M
Scaffold IDGa0256872_10293069 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100168Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0256872_102930691F100168N/AFTSVFITTNIFQIILAFFVWVKYASLLEISLGTIKYTLIFFVNCFFIQIINIIILCLSSLINQNIFNPEVKSKNNSGLWGIVMCEMTLLCLSNPESPMKLLLLPFTVKAKIYPIILVLLFVLANYLEVDVEIISGILYGIIYFYFLKSRLQISDSFVQNLETSRILRGMNNIKGFISVTHISNGMPVSLTKISTIDNEQEKEKLKGKGVVIAGSLDNIKEEEKENQNTEVSITVEDNTNL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.