Scaffold Ga0256872_10199588

Overview

Basic Information

• Taxon OID: 3300026539
• Scaffold ID: Ga0256872_10199588
• Source Dataset Name: Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 938
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086330	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256872_101995881	F086330	N/A	VIDLSHHVNRVMGLYLDPETMLLYSVSTDRTFFCSDLKNNLFAQMLIYTNTSGFTNLIFDKKNHRLFLTDEEGDLIVYSTVVFPPNMVRNLKTSAFDCIRAAYLDNLNQLFFTASVNGLISIINLGTPGRERLISEMSKFSIGKTKIRVCVGNPKINELITGDQVGRVTVWNLKSGKPIYSWEAHPKSAITKIWLQPEENLLWTGGKDLSLRIWHIPEKWLGSEAEDFEEKQVKDLTAKIAKKKIVKKYRKNQDGDIDSDDDDLNGWNFTEY