Scaffold Ga0256872_10014818

Overview

Basic Information

• Taxon OID: 3300026539
• Scaffold ID: Ga0256872_10014818
• Source Dataset Name: Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3143
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256872_100148182	F064301	GGAG	MAKTKRITARTVSLPTKVPPVWQIGMLFPDGKKISKPKCTLNEIFNTYFLNLDKYLNKGYNAEQLLELYQKTYYNKGVKVAIHYIDSWGHIWKGKVAWPRESKFIEFLNKRLNENYS
Ga0256872_100148184	F057035	GAG	MTEKEFLEKRTPIWLEGEDLHISTPSASDRNDMHVFLCKKYGYNALFAIRGYYWPGSHVQLYIGEYETPNCTILVTNYIFQYFPDIKYIGFGCHIGNPGEIWKPKVVVARNINCLNSDLLNKQAEESI