Scaffold Ga0209056_10078359

Overview

Basic Information

• Taxon OID: 3300026538
• Scaffold ID: Ga0209056_10078359
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2799
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F006480	Metagenome / Metatranscriptome	372	Y
F010188	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_100783592	F006480	N/A	MRRILIGAIALLLCGGISARGKSDPLVFVFLRVDRQQDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCASSLREHDAIVEGQIAKITDLVLDCGAHKFVVKSLDFRPRAR
Ga0209056_100783593	F000512	N/A	MIRVVRETHDTPESVAQRLLRAAGANRLGEPNYRAAWGWNRLAWIGGKFEDRDEHGVLLRERIELRLEPKYPAVNRWHIERWVPPETYGSPRSWYAQTVERENGISIPALGPYPSRGEYEHCFTLEGPHGEFIQLAPTIAEHIARAIEWSRKLPRSPKKRQLYDREGREERNYENWAYGLLDDAVPAFHKQPFVTVV
Ga0209056_100783595	F010188	GGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDALIVVTAVAQPDTSLQVSITDATAPPNQLPTDLLVP