NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10058947

Scaffold Ga0209056_10058947


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10058947 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3372
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000673Metagenome / Metatranscriptome944Y
F021825Metagenome / Metatranscriptome217Y
F037404Metagenome / Metatranscriptome168Y
F105673Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100589473F000673AGAAGGVAKKGFSRNFRYPSAELRDQVRAAVKERGFRSEQAFVIAACEHEIRQGANTKATEQFEARVAATLTNLAMQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNRNRETLKGMVADE
Ga0209056_100589474F105673AGGAGGMGCTQIIDETNRYWNIKGWGHFVADSRLNCLHFLRFAWYHFEQKVVPLWYRS
Ga0209056_100589475F021825GAGGMNKDYESCLDKLAAAPPETKSALIRALLPRIESALNSGQRLKAIWKALRKEGLQITYRGFHMTVSRARKMRAPTAAGSRGKQDSSPAVQQLQETKVETVEERDPLANLKLLEENRPGFHWRRTKSLNALVHGTEDSNDKNKR
Ga0209056_100589477F037404AGGAGMGNSPMKTEVVLDLKRITAEVAARHGMLVHQDDPAMLLVTMNEMVLQQVVGSIEARTEEIVAGMEAGFRSAQRQTMGSIEKEARKAGIAVREEIQKDVDAGRLHARELIVELNRAYSRSAVRRWVAVGVIAASSLLVLGAVLGVVLARVLK
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