Scaffold Ga0209056

Basic Information
Taxon OID	3300026538 Open in IMG/M
Scaffold ID	Ga0209056_10009629 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026538 Open in IMG/M

Scaffold ID

Ga0209056_10009629 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9850
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9850

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y
F025000	Metagenome / Metatranscriptome	203	N
F046938	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_1000962910	F046938	GAG	LTEEKAAEPRALLGGTPQQAAEDLPRLKELGIDHVFYDMNHPAQVPIDTQLVLLRRLVRLIKA
Ga0209056_1000962912	F025000	N/A	GFIGGIVGFIGGILVYIGREPFGADHVRNTTLALIFFVVGIAGTIFGFFYALAYGVSSGLGASVVGLFGIVFLVGGAIFGLSEVLLTYSLQSSNRHILLWTAYGISIFLGVVNVFLLPFGSGGFWTLYFGTGVLLFTGFLAAIPAALYGTAFYLARERIVRNEIPPPMTQREPGKPPW
Ga0209056_100096292	F002498	GAGG	LHVGSSTIRDLRPILAQTERLSIWEGRSHVDPVKAQQRVYNLNKGVESLSKEEHGLFFDAMQRLGLPNEVKLAAVALYLDFKGRPIGEYNSDHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVGREKLADAEERIIKSFGVQDSIILFPDLVSQLTKRQIESMAEGFAERGLVSSDEREELVRRSYDYLDAAVEKGLGPKMSYRGRAAGVMLKAVRDLGLEVPEIDIARAAGFEKRTMATNTDIIDALLKDSST
Ga0209056_100096294	F004048	N/A	LDRLRRLGGYERIKTGPSPEDSALLQLTRELSVQFQMPYWYKQVVWGRLDRYNSTGWMISKPTVSSGEAVTVPGSLPEADLMLPEFLKGKLSLDEWKILIALHLVRFKTYNQTRMSRLLGKVALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPVFLVAALWIRRSLRKSLKRREFELDRNVAEQLGVPQVLQVLEKILNLDRIRIPTNLRFPILVGWIAYWTPSIRERTGELSSPRPVDLPRSSRIPRIGLRGRVIAALVGFGIFWISGLVAGNLYARGQSMVACMDTSCSALVVIAAVGFWMATIGGISIVVWILRRFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209056_10009629

Overview

Ecosystem & Geography

Associated Families

Sequences