Scaffold Ga0209056_10007899

Overview

Basic Information

• Taxon OID: 3300026538
• Scaffold ID: Ga0209056_10007899
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10934
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011480	Metagenome	290	Y
F012856	Metagenome / Metatranscriptome	276	Y
F016793	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_1000789913	F011480	N/A	VDIAIEKSVRATLRFYNELRKQAVARGEPGKLPSFETFSTMATGLMEASKQVDRDRLKNLSMRDLFERTWAQKLLNYSTKKLLKDAYETLSKRF
Ga0209056_100078993	F012856	GAGG	LEKPSWTPIVLSGAIPREATDLLAILVMGTVALEASLATIGPAAFNSRLWLSLLVVPPTCALASVSTTTRRTREELALFAYGGSSWQILLRYFFRGALIALIAFSPIILQVFLATASIFELTVPVIVLFLVGGLFYSLPSLRRIRSSSFVENYKS
Ga0209056_100078997	F016793	GAG	VVVMTSKARKNKPTRIEKVLPLGKVIGFLRQQFHDPYLNPEAEVSFADFQAAFPEIPLADLEEGLSHWVMRPGAKVLSTKTTYFDGHELQVWYVHGLHEEHAELEDFVSRAALQA