Scaffold Ga0209056_10004643

Overview

Basic Information

• Taxon OID: 3300026538
• Scaffold ID: Ga0209056_10004643
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14473
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015710	Metagenome / Metatranscriptome	252	N
F024389	Metagenome	206	Y
F081674	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_1000464315	F015710	N/A	VLSVVFFVLAIISLSILTLYLIPDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGV
Ga0209056_1000464318	F024389	N/A	VLSWRDCVDEDVTGLIMKKRKFLSLVVVLATVIVAAILGYIYYEYIPRVLVDDTQTLKENHIWQFDLFVLGNRNVNITVSTAQYLVYVTFWYQQNSAATTYLINKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGEKVTTVVHVEVTS
Ga0209056_100046432	F081674	N/A	MAIEHAMVDYGIVLGLLGVASGAASLIYSRSQVVAARRQAEQATRATLLESNREISVRLQQIRARFFKVPGIEEELQNSRPKIKEVVDSVGGGDVYYFFRDVIDTFEDIFVLRRSRIVTDEHWRVWTGSQMAVYAGLPRFQLVFKLAKQEAFLDPEFVKFFEPLLEGRPVRDPRVPSGDTNSTRLPRLRKTRSKQEEETD