NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10001727

Scaffold Ga0209056_10001727


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10001727 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23958
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002266Metagenome / Metatranscriptome576Y
F007071Metagenome / Metatranscriptome358Y
F007642Metagenome347Y
F008127Metagenome338N

Sequences

Protein IDFamilyRBSSequence
Ga0209056_1000172712F007071N/ALPVSQFIAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGTTTLLALFLSDVDGVAIGAVVTVVATSRLVQKLN
Ga0209056_1000172715F008127GGALLNNKGYQTFSSCSGGHPTNPRWKVNRHESGYLAFSPPSNVAFALYLGLRKKNRDFTVEAQAVIDDGDGGDRETVCTRFYWQLSDRKKHKLEHYHKLFSQMREIIEGLPRAPGNGNEVLTGLFGKGNLQTGLRIVKGQMKRFTAN
Ga0209056_1000172716F007642N/ALSTREAVTVPEKPLAEVLVEGELSPFEHEVLYRILRKGFRLEHPSYTELLDEDLATRVNITFHYPYVTTIFTDVLQENWRELKELLRQVRYRRGKAGAAVTLSFLGEKNKLVFKSGVLEEKELSSALDQIGHLTGILGQMLRPETMDKPLELVEAVYDKKSDRWHEFKGFASADQNQSYVFDESVFRWIRL
Ga0209056_100017273F002266AGGAVLRVREHRLKPSFRLKTQDEIVEFIHARGLVSALGGNELPSFISAILGKPWKPSAKGFTGWMDWWSIKISGQSVARVSRDIEGRKDILATRIFRRTKTFVSNKLWPILDPIVKHHQDPAVKRQILSDIELKILETIGTEGSIRTDRLRKKLKLETKENNSKFHRSLNNLESYALIVGVEDPHPEKHLHANIWQTWDTRTHEGKSHAILPYSEALGKLFVKTIDACVIAREDQIPTWFEWSSEMQAAKEQSLLDGAILRSGHYLVSSRVRDVNN

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