Scaffold Ga0209157

Basic Information
Taxon OID	3300026537 Open in IMG/M
Scaffold ID	Ga0209157_1020518 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026537 Open in IMG/M

Scaffold ID

Ga0209157_1020518 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4073
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4073

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006990	Metagenome / Metatranscriptome	360	Y
F015454	Metagenome	254	Y
F038298	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209157_10205181	F015454	GGAG	MRSMVAVLVLTIAQVAPSLPVPALAAPNDFRVVSGTLLHPARLGPDAAVAVLKSDEGTVCYADLRAVSRIPTVERGAAVTLVGFEGSRPDQLTAQVIYPPEGTPALADAPLVRPQRIHGRIESLAGATMVVRMTDGKEVTFLLRGISAKIRGLLQRGDVVTVFGRPAETDFVVTGIVQSQ
Ga0209157_10205184	F038298	AGGCGG	MHHGGPARRCLPLTLGLLLALSAVSDALAGEWEKIRENYDNALRTHETRIGQIEARERGVADQEKRADKITRDKVASIRVALKAGGKAKNLADAAEKASGDGKALADLSREQGEYLDVVTGEWGPKGAERKKLQGAMATVRKNLDRADANLAKAAKAATLGVKPSDVLEKMAGIEASVSEALERLKARWQREQDARERESKQREREAAERARGAK
Ga0209157_10205185	F006990	GGAGG	MRQLLLVLLRRIRRGRPHVPGPGLYLICLTLAVVGCASHSLVPAAQSAAIRDRERSLASHSDAIQAAVRESGSMGALAFLDAKDGHLVVLPGDSPADAWERYTASPENRTSPVSVPVVVTFVYRTDVPKAPETVTRSGLQQQQALRTSVAAELQRLEERLGLVQRDLASTRQDTDKVLADSRALAEDLAAVRKFMLQTAQLGWLNHESTLENAGSIRKMAASSHELAASSARLEETLRQLSESLARQLKELAARLDAIQGKVQNIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209157_1020518

Overview

Ecosystem & Geography

Associated Families

Sequences