Scaffold Ga0209157_1009918

Overview

Basic Information

• Taxon OID: 3300026537
• Scaffold ID: Ga0209157_1009918
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6468
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F102968	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209157_10099184	F023077	GGA	LKKRIPVLAVVMMIAMALLVSPVHPATMNPQENVNLYTGNRLVIDSNQPSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYTVLAAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209157_10099185	F014723	GGA	LAEQYHRLFLRWEVLRGWIPAITFAAICVGLELLFFYNALNTGFVDKTVSIPIGTWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMIRTAALVLAPFTIILFVPYIVEANWFVNVAASIQAFKPTTESFYNWAFNVSQIDGATRFIISQMIAALGALIIAGLQLWRVKGTKNLVRAFQRRK
Ga0209157_10099187	F102968	N/A	VTVTIILAFVLAIVGLEVLGIVGALMGGISGFSLQEFLTQRMRNKIGSEMQLTSVGKTDIEIEYDDILEVRLVKSRLYLIAGNKSLSASFPRGYSRKMKPVLENIFESRFTTEESVRAAETAEKENEKSQHSRGDRGKFPRR