| Basic Information | |
|---|---|
| Taxon OID | 3300026537 Open in IMG/M |
| Scaffold ID | Ga0209157_1004377 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10570 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006137 | Metagenome / Metatranscriptome | 380 | Y |
| F010988 | Metagenome / Metatranscriptome | 296 | Y |
| F093597 | Metagenome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209157_10043772 | F093597 | N/A | MKNPLENFDYRIPCDDFFLYELGRLVEEDRASLDDEEFRRLIDAGIHEHVERRLEMRTEIAAHLRKLRSAPVRVLRFVEDIEAPLHDVPTIIQSYVAYLIRRLEQCVDEKPDEKVQAAADLLLESPEDRSAAEAAMETLGSIRSAASARVLAYVISEPVLEEDLEMKAYTLVRAMWPLARPYIFYSLKPHAHEDIPFRWFQLLIECGEASAVDRILEEVLAHANHPDYREDLLVLMELLGQARDPETEGKILQMLNSDETPHTVREILDGFLKRSKTPKHKETGSPEPWASLERLYAANKKYLEAAKLFDTGQKAAANRKLDELLREQPDYPFVLMLKQYCRGGLRPPPTSKPRDRGRS |
| Ga0209157_10043777 | F006137 | N/A | MQENRKRFHWHKTVETSAADLLRECGEKLTDRALWTEFQGRFQRLIFLYLMRALRLRRPQDDTCDVVPDLAQEVYLRLVQHDGRVLRSFRGTTEFSVLAFLGRISSSVVTDYQRQLATEKRRAPVVPIESIKAGELTGSRSAGAAEFDSNAIGSILSWIDVERIVEGDPDRKNARRNALIFKLHYIDGFQAAEIARFPGFELTKSGVESILARMRKRIQE |
| Ga0209157_10043779 | F010988 | AGGAG | MNQINRRDFLSVLGGGAVSVTGVSAFASTSSDKSPADVTSLYVKGLVLLDLGNPHLIRLGFPKAPGHKATLSVVPQNGLRRTIAIKGNGLVEAQGIVFPEPKIFVPELVRMKEFYGEGVKSRVDKCPSVISIPSNAIRSISTSEVSKARYTFVRADNGEEVTGFRPRQVAETIKIDLSSAGVLKLDDGKVNIPLDTTRELRAEYAPERTESGLDPYTDHFGHYFSYIERPAALDFDVVPRRISGSTSPTPRVGHHFMMTDSYAVCYIAAVP |
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