NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1168571

Scaffold Ga0209058_1168571


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1168571 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004437Metagenome / Metatranscriptome438Y
F004501Metagenome435Y
F045668Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209058_11685711F004501N/AYSWPALIEPKDIVIAILGSSAALGGFVLVFLGVVIASYQSYPGGVPAGVVRPYRISGTALLATFALSLVTVAVSLLWLINGGPAPLYDWAIALFAILLIAVFAAAVWATRMVLWQ
Ga0209058_11685712F045668N/AVALTQKKLQDLKDASLMSLLDDGAPSWRAKARHAFNATHAFIKEIRPDEPTLRGRS
Ga0209058_11685713F004437AGGAGMRMTVAKDASEQAKRFIDASLRGTRKPPSKAAYTRAVRLARRAIEELTLVATRGRS

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