Scaffold Ga0209058_1000941

Overview

Basic Information

• Taxon OID: 3300026536
• Scaffold ID: Ga0209058_1000941
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25018
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001093	Metagenome / Metatranscriptome	780	Y
F016382	Metagenome / Metatranscriptome	247	Y
F024995	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209058_100094115	F024995	N/A	MRVSDSSWTSPRGNFESVPTSLSSDQRFTAERAFSSVLVSTVREVVGDALGRNVLEILTSKGLLDASNNAKEFDLKLQSLFGNGATVLERIVVKDLNRKLGIPYDSEARFDYEKSLEKAKEVCFVESRLK
Ga0209058_100094116	F016382	N/A	VQASIYDLLGRSGIRKEAISSRFDDVVQALTSTLGTCSRVVVHRTVVEMFKEYSQRLDFSYTDSLRDRLALLKEAVVANHVLPRRLRDESVFDSVEKPDWVDAPKGQAYSSLYPMKKGVK
Ga0209058_10009413	F001093	N/A	MDRERFMAISVDRAGRMITFESCRGLQIRNVFSDYNSAMCYEMASDTKSRESWDKQELSGKSISRMNPLKLSRVFRFNDPETGAPQISDFPDSNPTGDTPLEIRMKHFTEVENFTFLAYVLGHELGGTAPRPIRTVTDLEVPDDEFQNFVNTAKTVSVTDEELADSVLDVGINWEHFVASNDNLLLPDHPLKISDVLMQEKIDALDIITEAFVRELNLRSVEKQTGTKAKKGHD