Scaffold Ga0209058_1000577

Overview

Basic Information

• Taxon OID: 3300026536
• Scaffold ID: Ga0209058_1000577
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31378
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006236	Metagenome	378	Y
F015708	Metagenome	252	Y
F022381	Metagenome	214	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209058_100057716	F015708	GGCGG	MSPSRTVQKAVTPDSVKSLMIIEAIVIAFFSFWLANEYVYNVFFRIYVNSIFIEHFTTYTIVLGLGIGLAGTAAAATLYKNLREAKVRLESVAPKIRGSVEKMLAAVPTMETQGAVPTISSVSVSQPASGASTTIGPPVPPPVSSSQQTEEKK
Ga0209058_10005772	F022381	AGG	LDPTILVVSITGVAVTVGLIYYSFRTLFLFKRNVAARAWIYISLSAIFSSVGVVAFLAESVAPIGLLPVGGVLETVGASFLFLGLRKNFLFWASKDHFPDRFPFPFALFGNTASFH
Ga0209058_10005774	F006236	GAG	LKIPPGTGLLLVGSGLYWVLAGPLIGWFTVLNPAQISLTQTGLTLVLSTGIASLVLGLWILPIDLEELSRLFSRNDGWIFLIPIELVVADIYLTLIGLSQGNWELNPFVASAVQIGPWAVVPFVVSYMALSEGLALGMLSIGKWLFGVVRQSRFVPFALICGAASFGPLSNTELLAFPGAGPVSYFVGMIIGMIALSVAIFLHFKRLS