Scaffold Ga0209160_1008749

Overview

Basic Information

• Taxon OID: 3300026532
• Scaffold ID: Ga0209160_1008749
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7598
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_53_14 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063506	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209160_100874910	F063506	AGG	LPAGVPVHERVDVPEPPAIEVDDRVHERLVELVVTASVTVPVNPLTGATVMVAVPATPAFTLRLAVLAVTVKSCTWKTILAV
Ga0209160_100874911	F063506	N/A	VHDRVDVPEPPAIDVEDRVQDRLVELVVTARVTVAEKPFTGATVIVAVPATPGFTVTLAVLAVTVKSWT
Ga0209160_10087492	F063506	N/A	LPAIAAEHDSVEVPEPPVILVDDSVQDRLVELVVTARVTVPVKPLTGATVIVEVPATPAFTVTLVALAVTVKS
Ga0209160_10087494	F063506	N/A	LPAMVAEQDRVEVPEPPVILVEDNVHERLVELVVTARVTVPAKPFTGATVIVEVPVTPALTVTLLELAVTVKSWTWKTTLAV