NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1001171

Scaffold Ga0209807_1001171


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1001171 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12427
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006236Metagenome378Y
F043305Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209807_100117110F043305AGGMSTPLYLDLVAMVAPALSLWLLIRQKPSFVGIARRNLIRLNIYFFLILAADIGRIIAQSSIATYVMLVGFFLVAMNFGHAAAVVQFCPEARTWGESMKIILKRTMLFPLFLLILGIWLAVTLTFEPVTSSLTMYGNEAYVLPAFPTWYIALTVAVAAPVILYPSLLLLSSLRRAQTSYTRNSLLLMLSSWLCFPTVGLVVFFLLSPMIPFSYELGLILSSALYCLLAISIRTLPGTTRFLKTSLFPQSLIKFGKRYLVLHDTSMRSISFLSSAFRSTIEAGAKVVLKSSATWLVDGLSRNDSRFKEWTENGKFVTSSARSDDKRFGKEGLSDKFGLSQTATVFVKELERQDLQGSMVSIARDSKNEPEAEVLLLESSQAPRPQVADFLQKNGDVELVNLSEASDPFSTLVNLDHPRIEGSKILLEYSSNSNFEDLVKKFFDEGIANAEMCTLFTSKSSKLYRALKGKRMVRIVAASSLVSAPDETPDGEIQIPDKELGLVTSLVTDLFENNKSVALSFVFDSITELIRGERWEQVYSGIKQLIELLSPSTVTAIFLVSKETTEERFLGALRGLFSVQMRLDDTEGQALRVVKAEF
Ga0209807_10011712F006236AGGAGLFVGSGLYWVLSGPLIGWFSVLNPTEIHLSQMGLTLVLITGIACLVVGLWIIPTDFQELHKLFSRNDGWMFTIPIVLVVADIYFTLIGLSAGNWELNPFVASAVQIGPWAVAPFVVSYIALSEGLALGMLSVGKWLIGVARPSRFMPFALVCGAASFGPLSNVGLLVLPGVSILGDSLGAIGMTGLAIGIYRHFRKEIVAHDALFLGPMP

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