NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1001165

Scaffold Ga0209807_1001165


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1001165 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12439
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039074Metagenome164Y
F040797Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209807_10011658F039074GGAGLLAPSEPVSGLGVGFIDQLHADLGGERVEPLHVTVDRVATDDTVMLIRAVREAAKRLRPASVRVDRLYFLPSQSRGPEIVKLEVAPDAFLDEDVNELLAALRRCGLPSLYPEDRAKPTITVLQRVARRDSVEPDLSALPLELFVADDVIVSRIRGPALYDILGSASIPTSG
Ga0209807_10011659F040797GGALGGCARLLVFTLWRAIVAALLAVLLTRVDTFVEERHTDSVTGRAWRAYRNRGKKAVRRGTPPNAGGAIDTSGRPRP

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