Scaffold Ga0209807_1000092

Overview

Basic Information

• Taxon OID: 3300026530
• Scaffold ID: Ga0209807_1000092
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36304
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (62.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020474	Metagenome	224	Y
F026524	Metagenome / Metatranscriptome	197	Y
F033381	Metagenome	177	Y
F066641	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209807_100009216	F020474	AGGAGG	VTEDDVEDIEVCEPIHECPDCGSVTIRGKWSIEGARTLTHAARMLRDYAHELEHMRASGLELASPVEADYGVVRPGGVPPDDALEVLDDE
Ga0209807_100009217	F033381	AGGA	MEESWRQMLDDQWLHDCMEEWRDYGHLIMRAKWTMDGATTLAEAAARFRERADELDRLARAGFELDQPVNDDYAFIVRPGEDSPMRLVEEDE
Ga0209807_10000922	F066641	GGAGG	MRRFKILAIGTLLTLGALAGTALGKEGAVTKLDALPPGGLHAGQIIPVGFMILMDGVEPYKADVAEIVIRNGTGKVLSYPATPQGPAGHYVANVYFPAAGTYTWQATQGTYFAPFDLGTIAVLGPVTSTATEATPASAPATNDPLSQAIPIFAGLVAIGGTIRLAQLLRSHRRISAAA
Ga0209807_100009225	F026524	N/A	MADLIVTTLARMERSEPARLAALWAFTVLLALAFLALLVGDQVRAASL