Scaffold Ga0209807

Basic Information
Taxon OID	3300026530 Open in IMG/M
Scaffold ID	Ga0209807_1000075 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026530 Open in IMG/M

Scaffold ID

Ga0209807_1000075 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41538
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (55.26%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

41538

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (55.26%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016941	Metagenome	243	Y
F029689	Metagenome / Metatranscriptome	187	Y
F035565	Metagenome	172	Y
F042823	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209807_100007516	F029689	N/A	MNDRVDFVCARAEHQGSEPNDALTMHEDRWAYCSAGAAEPHDWRLTGGMSLDDAKRFVQQPHPIRSADATGQRSD
Ga0209807_100007530	F042823	N/A	MVRRPRRLVVLALAFLLAACTAQVAAPRPSDSPSASATPTATPRPTNAASDVVYLRSVGPNGIANIVAIDARTGATLRTLPDGSASFDRTTLLATEEANGATKTLVRRLDLGSGRELGSYALDGTYHALWTDGGQTALSRDGHHLALSIYPYKENGDWVTGFRVVDADTGAGEATLDLKGQSTFGFVAMSPDGRSLFLNQFGEGVTTMRVFDIPSSTLLPATAIAGVRKQGGFRPPAVFSRDGRWMFSLDAGAPGNCTSFDGPRCTPKAEEQPYVFALDLVSRRMLSAPLPMEQRSTDFEKYLLWSVAVAPDATTVYAINPALGVIDEVDAQQMTVRRTSSITVSRADEGVLAAVGRFFFPVASAKRYITGGALLSPNADRIYAAGYKGIAVVNTSDLSSRAVWQSDGEFDALALTIDGERLYAVSNSSGKIAIIATRDGTKLGELKIPAFGQTIVRIDSAP
Ga0209807_10000755	F035565	GAG	LIGPRKYRVVPRAPGDTSPVDPKIADALRKAGMDPAKFTVAPFEAGEAALQVAAMFPSGTRLEHTFAFGTLNGALSAIERIVDDDVAARISRQGAKWIVVFDAPADAAIPGKAAHEKVASRVSDLGGDDRGFSHLTMNVTKKES
Ga0209807_10000756	F016941	N/A	VEFLLVLPVPGSSYRDLDEFRHLEERVSQAIGETGRVDRHDAGAGETDFLILTQKPLAAYDALKGFGDFDARPELRAAYLRNDNDDYEVYQREATFRFHIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209807_1000075

Overview

Ecosystem & Geography

Associated Families

Sequences