NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1000013

Scaffold Ga0209807_1000013


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1000013 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84478
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (74.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008999Metagenome324Y
F050245Metagenome145N
F063565Metagenome129Y
F078506Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209807_100001316F008999N/ALAEYTVHTTRVARKFEWFGMTVVKRYLTKDKDSRDLRDVHSNPEFYDKGVDLVLNLPNAQKRTIDLKVDSYIGSDPSRKVRGLCNPDSGFILLETISQLQYDRSRKVSTNGTLPVRQKPDVPGWFFTSSADEVYYYFLALLNTENQLNPLYAEYVELVKGNQPTDEVENRLLRELRVDRDLLVSFSLSEARAWYDSAPETVFHGYAPAPNPSYLTLSKRVKRDLFISNGIGKSHGSIFSLVKPRPVST
Ga0209807_100001322F050245AGGAGLRSQVRAEIRYYIDARKAERFKLSLFELMSLNSFPNPVNQTLYFNNEEHEVPFTYSIRGRRYEQKPFKERFKLKLSDKWIFEVKNTRSEHGRFIRHKRRNEMLPLQEILSSVKRMGRLGHVRIPHKLGLYAAASYSRNHFLDSDRGVRVTMDEDVRYFTFEGLAGTMLGASNRAIVELKIPPGRTSRPLVRKIHGLLRKENAEQGISKKATIFNLIEDRARKSGEAYKEPSHNTEIKAKVALDAEDQDIFPRIRNDLSEGKIEGFRLSDSYPNVMETGKLYHYVQVPTHEYVRFETSGQSRSATIKENFQVVQDPYRLGNVIKRREIEEPLQPDMLKMPYKVLTRRRKYFMVERNGGTREYAVMMDRSTHRGHELYQLEVEDVLNSPSPRTETRSINDVASMANYLIEEYSLEPTILTKNQWLMSLPN
Ga0209807_100001365F063565AGTAGMSSRPLLLLGNIAAIIVTIAAFLQALSWPIAGVLILVSLVFPLLANISPPRGSMTSDPASKIPVTTRRSQIETKTSQHRPPEKHTTPNYQSSTKIDQRPSPKPESVRTLGPKASPKLTASTITAPKPGVPNVESTPRPPAAKLGPDFNPTIAKGDYTEYEVELDAGKDFTGEVTASGLVNVYLLDDDNLDNLDQGEEFWSETGEEGVENVKLEFTPPSKGKWFFVVENADDRAVSVTVKIQKGTASPVPA
Ga0209807_100001370F078506AGGALSVQVVSTAFTRVLVKGEKGQRDMQRIPIDTSAFFTILPSEILFEIGAYPEDLKARLELERGDSLEARVYSVVVAAQGREDVTLAVTFEGAQPVLGAKFLEDLGLDVDSESGLLEPSGHHVFAFNYEP

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