Scaffold Ga0209806_1016810

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1016810
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3809
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008075	Metagenome / Metatranscriptome	339	N
F009595	Metagenome	315	Y
F013400	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_10168102	F009595	GAG	LRADIIETFQATVVRCFSTTLENLFGRPVKDQVMRILAEHKISRSEIGARFDDVAQVLTDVFGSSSRLLTYKTVVELYDEYSVRATFGFYDSLRDQILYLRERVLADIIKPRHSRTIDDSIYITPRRPVD
Ga0209806_10168103	F008075	AGCAGG	MRQSPGFANMFQASVAEGLANTLGAIAMQTLKSVLSYSFETYAEKPSELHRELSRVFGSGATTLERMITKELFRRLDLHYYDLDFEACVNLARRDMVLSERGNN
Ga0209806_10168106	F013400	AGGAG	MADTTLVTGMWVVAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSVFGIFLLLLNPDLITGLVQSISLPTLIVSYTVSIATSLLFFFGVFDLVRRFKLAAKKPPGANAST