Scaffold Ga0209806_1000572

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1000572
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25255
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024084	Metagenome	207	N
F031443	Metagenome	182	N
F043826	Metagenome	155	Y
F055991	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100057215	F031443	GAG	MSAMSDTRASKDWAPFSKQIKLEESDWAIVDALYEDHRNREGVISKADFIRKLFLTGARSQLLYLRQHSPASLSRVARTSGTN
Ga0209806_100057221	F055991	N/A	VAVLPTAKPALDLASHKPFQEFRVATLDELVKTLETAGQGIDVLAIKGVPHLVCGKPLANILVQTDAVKHVPGDLLAIYQYCEGCKVAVRVL
Ga0209806_100057222	F043826	N/A	MVRAVGRSWGSVSLYVKAVLVLQVAIIVGLSVWMYNEYVSNPYLQTYLFGFFQGKGSLIAVLGFGGLLGTVLFGILLKAGSILGEIEHLSEKVENTNVVKAGLEKSVTMHVLKVVDAEPVDEIGRLHRSLRRWNERSKNQE
Ga0209806_100057223	F024084	GAG	MKHQAGILGYCEMPTPKKLMELQETINEDLLKARLPEIRIDGFKLPDQALEITFERETVTGENRERLWEIINAHYRKLLRELELKE