Scaffold Ga0209806

Basic Information
Taxon OID	3300026529 Open in IMG/M
Scaffold ID	Ga0209806_1000518 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026529 Open in IMG/M

Scaffold ID

Ga0209806_1000518 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26044
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (47.83%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26044

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (47.83%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F016650	Metagenome	245	Y
F019810	Metagenome	227	N
F019978	Metagenome	226	N
F055614	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100051810	F019978	AGG	MPEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSDQLAKEEQKVGEEQGFCKCARNNPKT
Ga0209806_100051811	F055614	N/A	MSSEDDASFEDRFSDQARKKALEMFEHQPIPAGKASDFGELFTRILWEKDWTDKLESVAVKIRNLFRIRNTDTKLSKELKALIPDMKEVAKAYDEMTTRYKEFIQTVLDAKQSPSSQTRKKTGSGNNAKLSNHSVRHK
Ga0209806_100051815	F016650	GAG	MSNMTVQEAGVGTEAGRLQEDLRGIFSKMLSHARTIDMTLILGDNTEALGRIRELEAYLERGLEVLSRPLSRES
Ga0209806_100051821	F019810	AGG	MESRLDSGLEIRRILLLTRLKDVEKGMTMPQLVKDCGKVSGWNIPGKTAWEVVQHVVQSLIDDKLVELGTRFVATVKGHEYLADPLKWRIDERTTEELADNMFWKEIYDVFDKAYHRLKPKS
Ga0209806_10005188	F014491	N/A	MFLLVLASLAMFGTIAYTITLQDISNYAVTYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTTLTPLLRYQFLTGIGLFTILVVFYSTSTIEATRQRLVAAQAAKAGQPGNTTG
Ga0209806_10005189	F013998	GAG	MRLKMPLKMHRLLSLLAFVLALIGGVLVVVSALGGLAHLSIGSLAINGLVFLFGLCAILGGWMIYTGIRKLGGIMTLIAGIILFVLMGGAGTSVLLVLAAGVLGLLAAELKPWWAFWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209806_1000518

Overview

Ecosystem & Geography

Associated Families

Sequences