Scaffold Ga0209806_1000407

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1000407
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29276
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013625	Metagenome	269	Y
F029073	Metagenome	189	Y
F038612	Metagenome	165	N
F072144	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100040710	F072144	N/A	MKLRFLEEIGGVKTARREAESLLLATALLRSHRITVRDEGRMLKLARKNKVLLRAADLIHLPSSVIDEAKKDVDEAFDLYDRMSGVFAKHGISFVAIKSFDSLPDIGHDIDLLVASPSELAEAEKILVNEYRVRPQGLTHCDRLLGKFSCFLPGYKHDFELYPTISQLGETHLDPTQVILHRRKTSIEGHVVWMTSDSDRVLIRVIHAMFRHNFLKLSDILDFLKLIETADSQEVIEKIDNARIGDAFIFYLLSIERFLKACRVENPSFQLLKKQAQERFGNDRLTFLRRDRLVLPYRIPASAIIMLFLLKAARDAASARWRSSISCLVAPPLIILDFISAAFRAGGRGGVW
Ga0209806_100040721	F013625	GAG	LNMVPRRVIVFILLSASFSVVYSSIAYYTLSKPPAQEFMAWGVFSPGGSLSNYFSGSEANVTVGKSLSWHFAVTNRMGSIQYVQIVYRLGNSTSASPNATVSGDAVPQLGNSSIFIPNAQTALMNFTWSIASRISRGGLIFLNMAINGKQVITSVGAVGGQRFRFFFELWIFDVASNSFQYGYKVQNSRVGVPLQVWFNSL
Ga0209806_100040722	F029073	GAG	VSNKRRTEILLVSQSVIITLLLYWIYLESHSNSYFSAWLAQNFPFGFVLLDRWIVGGAITELFLVTGYWIIQLESEGVKRKPKIKQIDKKEIELEPEVEAKIERPSPFSGARPIYETVEIRTIAVILLLSTQAISLWLITASVFRITIFTANSFYYYSHLPTTYWWGLAATLALLFTRSNLRGRAQTGLDLSALFLLAFYLIGLPSFTYQDARFLDTYYHTGNALDLLNYQGWPTSPNWYVHQFPGAFAFIGELVSVAGIDPFQLMRFYPLGLSLVVVFLVYVVARTHSPRYASLASAVLLSGLWFQLHISPQSLELILYLGAILLFVKIIDDEPRRKLWTILGLASTPIFVASHPETPLVVSLGLAGFLVLSLLRSRQTFNQQVSKFALPSLVLVGIILFWWADIAIDARTLVQTSLVDRALQSLLGLPLGATTRTLNVAATPSYSYGLAVLSEQGVSVMVWAVGLAYFALFRKLQPRELFLGGLFLAAVSTIPIAVFGRTDVLQRSYLFALFPFVVLTAWLLERRAVLTLGGVNLFRFLKIGFIIMLVLFSAIIPITRYGVDPIEYISGSSLYVSNIGAGLETQHSLLFLHPDEDGWRFYAGLNGAIREPKLEQNNMANQPGGYVKPGTDPTVPGFNLTYTPADSSASYIITTSYWQNLYTLRFGTNSAFYIQARENYTASIAQNFNLVYSTGTDQIYANEELG
Ga0209806_10004079	F038612	AGGCGG	MRKILLTLSGTHGSGKSTNAGKCYYLLNRSGYKFSYLRHQDLLDPFGFVVRRVARILHVEPNELERLTPTRVAWSLYLLFIYCPILVGGIRLRHLLGYSVVSDRYLYDLMVGFRDNGMTVPSEALLTRLLPHPDISFVFDAPEQRILMDRPEHTAEFIRKEQFLYRQIAEEFDLSKVNTSDPASIVWNHMLVQIKAVFEDKPPTEEMLFQQVVN