NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000377

Scaffold Ga0209806_1000377


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000377 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30005
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006236Metagenome378Y
F034529Metagenome174Y
F043305Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100037711F043305AGGVKSRVTIGYTVQLRHLETFAHCPNTLSRTLTGPRKGNMSTPVYLDLVAMVAPALSLWLLIQQKPSFVGIARRNLIWLNIYFFLILAADIDRILTQSIFATYVMLVGFFLVAVNFGHAAAVVQFCPEARTWGESVRIILKRTMLFPLFLLTLGTWLVVTLVFDPVTSSLTSYGNEAYVLPSFPTWYTALTVAVAVPIVLYPSLLLLSSLRRAQTSYTRNSIFLMLSSWLCFPTVGLVVFFLLSPIIPFSYELGLIISSVLYCLLANSIRTLPGTTRFLKSSLFPQSLIKFGKRYLVLHDSGMRTVSFLSSAFRSTIEAGAKVVLKSPAPWLVEGLSRSDSRFNEWTENGKFVTPSTVSDDKRSGKEALSDKFGLSQTATVFVKELERQDLQGSMGSIVKESKNPGEPEAEVFLLQSSKAPRPQVADFLQKNGDVELVNLSEASDPFSTLVNLDHPRIEGSKILLEYSSNANFEEVVKKFFDEGIANAEMCALFTSKSSKLYRSLKGKRMVRIVAASSLVSVPDESPDGEIQIPDKELGLVTSLVTDFFENNMSVALSFVFDSITELIRGERWEQVYSGIKQLIELLSPSTVTAIFLVNTETTEARFLGALRGLFSVQMRLDDTQGQALRVTKAAF
Ga0209806_100037719F006236GAGGLKIPPGAGLLFVGSGLYWVLAGPLIGWFSVLNPAQINLSQMGLTAVLITGVACLVLGLWIIPIDLEQLSELFSRSDGWIFAIPIALVVADTYLTLIGLSKGNWELNPFVASAVQIGPWAVVPFVVSYMALSEGLALGMLSIGKWLFGVARASRFMPFALICGAASFGPVSNTELLAFPGAGPGDYFVGIVIEMVALSTGIYLHFRRLKW
Ga0209806_100037725F034529GGGGGMKLVTLFKKSIEMPPEYAPGRCNIGARGRAIRLATGLGIVAVFVGFGLLTTGSVSLVFRLFLFIPFYIGLLAALEGTMSFCVLHASRGTYDLHEPSGVAFGKSKTKMAVWSEEWKKLDRRKARVMHFEAVLGALVLAVLLALA

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